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| Tosello, Vanessa; Borremans, Catherine; Detoc, Jerome; Pelleter, Ewan. |
| Since 2003, IFREMER manages the marine geology database of Brest (BGMB) which includes information on geological samples (sediment cores and rocks) and geotechnical measurements collected by IFREMER teams and/or resources and related analyses (stratigraphy, lithology, chemistry, grain size). In the same way, the IFREMER Deep Sea Lab database (BIOCEAN) gathers data about biological, sediment and hydrological samples collected by IFREMER biologists and ecologists since 1967. These databases which include several thousands of operations and samples require having a better visibility for the scientific community through the improvement of existing software tools and services. Indeed, according to the current scientific projects and future applications (e.g.... |
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| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00363/47372/47358.pdf |
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| Ten Hoopen, Petra; Pesant, Stephane; Kottmann, Renzo; Kopf, Anna; Bicak, Mesude; Claus, Simon; Deneudt, Klaas; Borremans, Catherine; Thijsse, Peter; Dekeyzer, Stefanie; Schaap, Dick M. A.; Bowler, Chris; Gloeckner, Frank Oliver; Cochrane, Guy. |
| Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for "Reporting" and "Serving" data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be... |
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Palavras-chave: Data standard; Marine; Molecular; Biodiversity; Microbial; Bioinformatics; Reporting; Interoperability. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00311/42266/41588.pdf |
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| Borremans, Catherine; Merceur, Frederic. |
| More and more research work on marine environment is based on the analysis of imagery. Thanks to technological development, we can now monitor ocean ecosystems using video cameras deployed on different platforms. Video acquisition provides information on organisms’ life and on environmental conditions. The sources of video data and the subjects of interest are many and varied: films from submersible dives in deep-sea environment, programmed video sequences of undersea rotary video stations in lagoons, high-frequency video data on deep-sea observatories, video observations recorded by fixed and autonomous camera devices on fishing gears, and others. The information contained in those images is essential to understand species biology and the functioning of... |
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| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00361/47245/47209.pdf |
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| Appeltans, Ward; Provoost, Pieter; Reed, Greg; Vandepitte, Leen; Baker, Maria; Higgs, Nicholas; O'Hara, Timothy; Althaus, Franziska; Amon, Diva; Bilan, Meri; Blazewicz, Magdalena; Borremans, Catherine; Bourque, Jill; Brager, Stefan; Chapman, Abbie; Cobley, Amber; Cunha, Marina; Dahlgren, Thomas; Davies, Andrew; De Leo, Fabio; Dornback, Matt; Horton, Tammy; Ingels, Jeroen; Martini, Severine; Mcveigh, Doreen; Olson, Christopher; Polanco, Andrea; Ramos, Ana; Rastoin, Etienne; Ravara, Ascensão; Riehl, Torben; Roterman, Christopher; Sidi, Mohamed Mohamed Moctar. |
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| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00363/47373/47359.pdf |
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